中国科学院大学教授。分别于1982年和1986年在南京林业大学获学士和硕士学位，1993年在中国科学院植物研究所获博士学位。1996年5月至1998年5月在美国Washington University和Michigan State University进行访问研究。2001年10月至2011年10月任系统与进化植物学国家重点实验室主任；2006年6月至2015年9月任中国科学院植物研究所副所长。曾兼任中国科学院北京植物园主任、中国植物学会副理事长兼秘书长等。现任中国植物学会常务理事、国际生物科学联合会（IUBS）中国委员会副主席、中国科学院生物多样性委员会委员等。目前担任学术期刊BMC Evol Biol、Conser Genet、和《西北植物学报》副主编以及Genome Biol、Biology Letters和Biological Research等期刊编委。迄今发表论著280余篇（部），其中以第1或通讯作者在Nature Biotech、Nature Plants、Nature Commun、PNAS、Genome Biol、Mol Biol Evol、New Phytol、Mol Ecol、Evolution等国际重要刊物上发表论文60余篇。已培养硕士和博士45名。2000年获国家杰出青年科学基金，2001年获中国科学院青年科学家奖，2015年入选中国科学院人才计划，2017年入选美国植物学会（Botanical Society of America）通讯会员（Corresponding Member），2018年获中国植物学会IBC 2017杰出贡献奖，2021年获中国科学院朱李月华优秀教师奖。

主要研究内容： 

1. 植物分子系统学和分子进化 

利用分子生物学手段，结合形态学、细胞学等证据探讨植物类群的系统发育关系，完善类群的分类系统；同时以特定植物类群为材料，探讨基因和基因家族的进化规律和机制。研究的类群涉及稻属（Oryza）、沙参属（Adenopnora）、乌头属（Aconitum）、沙棘属（Hippophae）和葱属（Allium）等。近年来的研究重点为禾本科稻族和稻属的起源、分化和生物地理格局，栽培稻的起源和扩散；同时以稻属为模式探讨水稻特定功能基因的起源和进化。 

2. 植物物种形成和多倍体进化 

采用常规的移栽、人工杂交、细胞学和群体统计等手段，结合各种分子标记技术，探讨植物物种形成的式样和机制，以及多倍体的起源和进化。涉及的类群包括稻属（Oryza）、沙参属（Adenopnora）、乌头属（Aconitum）、绵枣属（Scilla）等。近年来的研究重点为野生稻的物种形成和适应性机制，稻属异缘多倍体的起源和网状进化式样。目前主要从基因组结构水平和基因表达角度探讨稻属近缘种的物种形成和生态适应的分子机制。

3. 植物群体遗传学和保护遗传学 

利用分子标记技术（allozyme, RAPDs, ISSRs, SSRs等）和DNA序列数据探讨植物群体的遗传多样性和遗传结构及其影响因素，植物的交配系统和生殖方式（克隆性）及其进化意义；采用群体遗传学的原理和方法研究珍稀濒危植物的遗传学特点，揭示植物濒危的机制，并探讨植物保护和利用的基本策略。研究的主要类群包括银杉（Cathaya argyrophylla）、裂叶沙参（Adenophora potaninii）和兰花（Orichids）等中国珍稀濒危物种以及野生稻、马尾松（P. masoniana）和云南松（P. yunnanensis）等重要林木和作物近缘种。近年来的研究重点为珍惜濒危植物银杉、兰花和野生稻等类群。 

主持的主要科研项目

[1] “沙参属的分类和进化”，国家自然科学青年基金(批准号: 39600009) (1997.1-1999.12)，资助金额8万元；主持人。

[2] “稻属的分子系统学和分子进化研究”，国家杰出青年科学基金(批准号: 30025005)(2000.1-2003.12)，资助金额80万元；主持人。

[3] “植物进化机制的进化发育生物学研究”，国家自然科学基金委“创新研究群体科学基金”(批准号: 30121003)(2002.1-2004.12)，资助金额360万元；主持人。

[4] “若干重要植物类群的系统发育重建和分子进化”，中国科学院“十·五”重要方向项目(批准号: 30025005)(2001-2004)，资助金额200万元；主持人。

[5] “物种多样性形成和维持的机制与重要生物资源的研究和保护”，科技部国际科技合作重点项目计划（批准号: 2001BC003）(2002.4-2007.3)，资助金额450万元；主持人。

[6] “稻属中的杂交和多倍化及其进化意义”，国家自然科学基金委重点项目（批准号: 30430030) （2005.1-2008.12)，资助金额145万元；主持人。

[7] “植物小种群的生态遗传学效应与物种濒危机制研究”，中国科学院知识创新工程重要方向项目（批准号: kzcx2-yw-414)（2007.1-2009.12)，资助金额200万元；主持人。

[8] “家养动物和栽培植物的起源”，《国家重点基础研究发展规划》（973)项目“人工选择与基因组进化”第四课题（批准号: 2007CB815704)（2007.7-2011.8)，资助金额455万元；共同主持人。

[9] “禾本科植物的适应性辐射及其进化机制”，国家自然科学基金委重大项目（批准号: 30990240)（2010.1-2014.12)，资助金额1000万元；主持人。

[10]“人工选择在水稻驯化过程中的作用和机制”，国家自然科学基金重大研究计划重点支持项目（批准号: 91231201） (2013.1-2016.12)，资助金额320万元；主持人。

[11] “中国科学院植物研究所经典植物分类特殊学科点项目”，国家自然科学基金国家基础科学人才培养基金（批准号: J1310002）(2014.1-2016.12)，资助金额300万元；主持人。

[12] “水稻耐旱性状分子模块系统解析”，中国科学院战略性先导科技专项（A）“分子模块设计育种创新体系”子课题（批准号: XDA08020103）(2013.8-2017.12)，资助金额1437.4万元；主持人。

[13] “平行物种形成的基因流与自然选择机制----以水稻野生近缘种为例”，国家自然科学基金重大研究计划项目课题4（批准号：91731301）(2018.1-2019.12)，资助金额200万元；主持人。

[14] “植物响应干旱环境的策略及其分子机制”，中国科学院战略性先导科技专项（B）“大尺度区域生物多样性格局与生命策略”子课题（批准号: XDB31000000）(2018.8-2022.7)，资助金额300万元；主持人。

[15] “野生稻适应性分化和物种形成的分子机制”，国家自然科学基金重点项目（批准号：32130008）（2022.1-2026.12），资助金额287万元；主持人。

[16] “野生珍稀种质资源的遗传动态和濒危评估体系构建”，国家重点研发计划“主要粮油作物珍稀濒危种质资源的抢救性保护”项目子课题（2022.1-2026.12），资助金额480万；主持人。

研究论文（注*为通讯作者）

2024

Meng Q-L†, Qiang C-G†, Li J-L†, Geng M-F, Ren N-N, Cai Z, Wang M-X, Jiao Z-H, Zhang F-M, Song X-J, Ge S*. 2024. Genetic architecture of ecological divergence between Oryza rufipogon and O. nivara. Molecular Ecology 33: e17268

Jiang J, Xu Y-C, Zhang Z-Q, Chen J-F, Niu X-M, Hou X-H, Li X-T, Wang L, Zhang YE, Ge S, Guo Y-L*. 2024. Forces driving transposable element load variation during Arabidopsis range expansion. Plant Cell 36: 840-862

Zheng XM*, Ratnasekera D, Fan JY, Henry RJ, Song BK, Olsen KM, Joshi BK, Banaticla-Hilario MCN, Pusadee T, Melaku AG, Loko YLE, Vilayheuang K, Oppong GK, Poku SA, Wambugu PW, Ge S, Merotto A, Aung OM, Venuprasad R, Kohli A, Zhou WB, Qian Q. 2024. Global wild rice germplasm resources conservation alliance: World Wild-Rice Wiring. Molecular Plant 17: 516-518

2023

Jing C-Y†, Zhang F-M†, Wang X-H†, Wang M-X†, Zhou L, Cai Z, J-D, Geng M-F, Yu W-H, Jiao Z-H, Huang L, Liu R, Zheng X-M, Meng Q-L, Ren N-N, Zhang H-X, Du Y-S, Wang X, Qiang C-G, Zou X-H, Gaut BS, Ge S*. 2023. Multiple domestications of Asian rice. Nature Plants 9: 1221-1335

Li Z†, Wang B†, Luo W, Xu Y, Wang J, Xue Z, Niu Y, Cheng Z, Ge S, Zhang W, Zhang J*, Li Q*, Chong K*. 2023. Natural variation of codon repeats in COLD11 endows rice with chilling resilience. Science Advances 9: eabq5506

Wang J, Fu G-F, Tembrock L, Liao X-Z, Ge S, Wu Z-Q*. 2023. Mutational meltdown or controlled chain reaction: the dynamics of rapid plastome evolution in the hyperdiversity of Poaceae. Journal of Systematics and Evolution 61(2): 328-344

Tennakoon A, Sandamal S, Ge S, Marambe B, Ratnasekera D*. 2023. Weedy rice: An insight into genetic diversity and population structure for effective weed management. Tropical Agricultural Research and Extension 26(2): 135-150

Guo XL†, Hu XD†, Li JW, Shao BY, Wang YJ, Wang L, Li K, Lin DL, Wang HC, Gao ZY, Jiao YN, Wen YY, Ji HY, Ma CB, Ge S, Jiang WK*, Jin XH*. 2023. The Sapria himalayana genome provides new insights into the lifestyle of endoparasitic plants. BMC Biology 21(1): 34

李珊珊，陈美，陈文俐，葛颂*。2023. 芒属植物野生资源研究及其进展。植物科学学报 41(6): 705-718

2022

Ge S*. 2022. A review of recent studies of plant systematics and evolution in China. Biodiversity Science. 30(7), 22385.

Yang T, Liu R, Luo Y, Hu S, Wang D, Wang C, Pandey MK, Ge S, Xu Q, Li N, Li G, Huang Y, Saxena RK, Ji Y, Li M, Yan X, He Y, Liu Y, Wang X, Xiang C, Varshney RK*, Ding H*, Gao S*, Zong X*. 2022. Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nat Genet. 54(10):1553-1563. DOI: 10.1038/s41588-022-01172-2.

Tang L*, Liao X, Tembrock LR, Ge S, Wu Z*. 2022. A chromosome-scale genome and transcriptomic analysis of the endangered tropical tree Vatica mangachapoi (Dipterocarpaceae). DNA Res. 29(2): dsac005. DOI: 10.1093/dnares/dsac005.

Huang W, Zhang L, Columbus JT, Hu Y, Zhao Y, Tang L, Guo Z, Chen W, McKain M, Bartlett M, Huang CH, Li DZ, Ge S, Ma H*. 2022. A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis. Mol Plant. 15(4):755-777. DOI: 10.1016/j.molp.2022.01.015.

Liu Q L, Liu L, Ge S, Fu L-P, Bai S-Q, Lv X, Wang Q-K, Chen W, Wang F-Y, Wang L-H, Yan X-B*, Lu B-R*. 2022. Endo‐allopolyploidy of autopolyploids and recurrent hybridization—A possible mechanism to explain the unresolved Y‐genome donor in polyploid Elymus species (Triticeae: Poaceae). Journal of Systematics and Evolution. 60(2): 344-360.

2021

Zou X-H, Du Y-S, Wang X, Wang Q, Zhang B, Chen J, Chen M, Doyle JJ, Ge S*. 2021. Genome evolution in Oryza allopolyploids of various ages: Insights into the process of diploidization. The Plant Journal. 105, 721–735

Wang M-X, Jing C-Y, Wang X-H, Cai Z, Zhou L, Geng M-F, Han J-D, Guo J, Zhang F-M, Ge S*. 2021. Genomic landscape of parallel domestication of upland rice and its implications. Journal of Systematics and Evolution59(5): DOI: 10.1111/jse.12636

Xu X, Ge S, Zhang F-M*. 2021. Genetic and geographic patterns of duplicate DPL genes causing genetic incompatibility within rice: implications for multiple domestication events in rice. Rice Science28(1): 58–68

Liu Q, Liu L, Ge S, Fu L, Bai S, Lv X, Wang Q, Chen W, Wang F. Wang L, Yan X-B*, Lu B*. 2021. Endo-allopolyploidy of autopolyploids and recurrent hybridization—a possible mechanism to explain the unresolved Y-genome donor in polyploid Elymus species (Triticeae: Poaceae). Journal of Systematics and Evolution 59(5): Doi: 10.1111/jse.12659

2020

Xu X, Meng Q-L, Geng M-F, Ren N-N, Zhou L, Du Y-S, Cai Z, Wang M-X, Wang X, Wang X-H, Han J-D, Jiang S, Jing C-Y, Liu R, Zheng X-M, Yang Q-W, Zhang F-M, Ge S*. 2020. Adaptive divergence in flowering time contributes to nearly complete reproductive isolation between incipient wild rice species (Oryza rufipogon and O. nivara). Science China Life Sciences63(11): 1714-1724

Liu P-L, Zhang X, Mao J-F, Hong Y-M, Zhang R-G, Yilan E, Nie S, Jia K, Jiang C-K, He J, Shen W, He Q, Zheng W, Abbas S, Jewaria PK, Tian X, Liu C-J, Jiang X, Yin Y, Liu B, Wang L, Jin B, Ma Y, Qiu Z, Baluska F, Samaj J, He X, Niu S, Xie J, Xie L, Xu H, Kong H, Ge S, Dixon RA, Jiao Y*, Lin J*. 2020. The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements. Genome Biology21: 291

Ge S*, Guo Y-L. 2020. Evolution of genes and genomes in the genomics era. Science China Life Sciences63(4): 602-605

郑晓明, 周海飞，陈文利，周廉，任宁宁，刘荣，孟庆霖，耿牧帆，刘开强，李丹婷，吕荣华，马小定，乔卫华, 朱永清，卢宝荣，杨庆文*，葛颂*2020. 东南亚和南亚野生稻种质资源收集与初步研究。植物遗传资源学报21(6): 1503-1511

2019

Cai Z#, Zhou L#, Ren N-N#, Xu X#, Liu R, Huang L, Zheng X-M, Meng Q-L, Du Y-S, Wang M-X, Geng M-F, Chen W-L, Jing C-Y, Zou X-H, Guo J, Chen W-B, Zeng H-Z, Liang Y-T, Wei X-H, Guo Y-L, Zhou H-F, Zhang F-M, Ge S*. 2019. Parallel speciation of wild rice associated with habitat shifts. Molecular Biology and Evolution 36: 875-889

Zhao Y-P#, Fan G#, Yin P-P#, Sun S#, Li N#, Hong X#, Zhang H, Hu G, Zhang F-M, Han J-D, Hao Y-J, Xu Q, Yang X, Xia W, Chen W, Lin H-Y, Zhang R, Chen J, Zheng X-M, Lee S. M-Y, Lee J, Uehara K, Wang J, Yang H, Fu C-X*, Liu X*, Xu X*, Ge S*2019. Resequencing 545 ginkgo genomes across the world reveals evolutionary history of the living fossil. Nature Communications 10: 4201

Liu W#, Chen L#, Zhang S#, Hu F, Wang Z, Lyu J, Wang B, Xiang H, Zhao R, Tian Z*, Ge S*, Wang W*. 2019. Decrease of gene expression diversity during domestication of animals and plants. BMC Evolutionary Biology 19:19

Niu X-M#, Xu Y-C#, Li Z-W, Bian Y-T, Hou X-H, Chen J-F, Zou Y-P, Jiang J, Wu W, Ge S, Balasubramanian S, Guo Y-L*. 2019. Transposable elements drive rapid adaptation in Capsella rubella. Proceedings of National Academy of Sciences USA 116: 6908-6913

Li S-S, Zhou H-F, Chen W-L, Yan J, Cai Z, Wei R-X, Chen C-H, Han B, Li J-Q, Sang T, Ge S*.2019. Population genetics and evolutionary history of Miscanthus species in China. Journal of Systematics and Evolution57: 530-542

Chen J, Hao Z, Guang X, Zhao C, Wang P, Xue L, Zhu Q, Yang L, Sheng Y, Zhou Y, Xu H, Xie H, Long X, Zhang J, Wang Z, Shi M, Lu Y, Liu S, Guan L, Zhu Q, Yang L, Ge S, Cheng T, Laux T, Gao Q, Peng Y, Liu N*, Yang S*, Shi J* .2019. Liriodendron genome sheds lights on angiosperm phylogeny and species-pair differentiation. Nature Plants 5: 18-25

Ge S.2019. Introduction of barley to the Tibetan Plateau: an important step toward Tibetan civilization. National Science Review 6: 1014 (Commentaries)

2018

Sandamal S, Tennakoon A, Meng QL, Marambe B, Ratnasekera D, Melo A, Ge S*. 2018. Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O. nivara in Sri Lanka. Ecol. Evol., DOI: 10.1002/ece3.4665.

Yu XW, Zhao ZG, Zheng XM, Zhou JW, Kong WY, Wang PR, Bai WT, Zheng H, Zhang H, Li J, Liu JF, Wang QM, Zhang L, Liu K, Yu Y, Guo XP, Wang JL, Lin QB, Wu FQ, Ren YL, Zhu SS, Zhang X, Cheng ZJ, Lei CL, Liu SJ, Liu X, Tian YL, Jiang L, Ge S, Wu CY*, Tao DY*, Wang HY*, Wan JM*. 2018. A selfish genetic element confers non-Mendelian inheritance in rice. Science, 360: 1130-1132.

2017

Cai Z, Ge S*. 2017. Machine learning algorithms improve the power of phytolith analysis: A case study of the tribe Oryzeae (Poaceae). Journal of Systematics & Evolution 55: 377-384.

Wu ZQ*, Gu CH, Liu FQ, Tembrock L R, Zhang D, Ge S. 2017. Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species. PLoS One 12(5): e0177553.

葛颂*. 2017. 什么决定了物种的多样性? 科学通报, 62(19): 2033-2041.

2016

Guo J, Huang L, Liu R, Zheng X-M, Liu P-L, Du Y-S, Cai Z, Zhou L, Wei X-H, Zhang F-M, Ge S*. 2016. Widespread and adaptive alterations in genome-wide gene expression associated with ecological divergence of two Oryza species. Molecular Biology and Evolution 33: 62-78 [PDF] 

Wu Z-Q*, Ge S. 2016. The whole chloroplast genome of wild rice (Oryza australiensis). Mitochondrial DNA 27:1062-1063[PDF] 

Bai Z, Chen J, Liao Y, Wang M, Liu R, Ge S, Wing R, Chen M*. 2016. Sequence-based analysis of the origin and impact of copy number variation in the rice genome. BMC Genomics 17:261[PDF] 

Li Z-W, Chen X, Wu Q, Hagmann J, Han T-S, Zou Y-P, Ge S, Guo Y-L. 2016. On the origin of de novo genes in Arabidopsis thaliana populations. Genome Biology and Evolution 8: 2190-2202 [PDF] 

Guan R*, Zhao Y*, Zhang H*, Fan G*, Liu X, Zhou W, Shi C, Wang J, Liu W, Liang X, Fu Y, Ma K, Zhao L, Zhang F, Lu Z, Lee S M-Y, Xu X, Wang J, Yang H, Fu C*, Ge S*, Chen W*. 2016. Draft genome of the living fossil Ginkgo biloba. GigaSciencec 5: 49 [PDF] 

2015及以前

Liu R, Zheng X-M, Zhou L, Zhou H-F; Ge S*. 2015. Population genetic structure of Oryza rufipogon and Oryza nivara: implications for the origin of O. nivara. Molecular Ecology 24: 5211-5228 [PDF] 

Ma Y, Dai X, Xu Y, Luo W, Zheng X, Zeng D, Pan Y, Lin X, Liu H, Zhang D, Xiao J, Guo X, Xu S, Niu Y, Jin J, Zhang H, Xu X, Li L, Wang W, Qian Q, Ge S, Chong K*. 2015. COLD1 confers chilling tolerance in rice. Cell 160: 1209-1221 [PDF] 

Zou X-H, Du Y-S, Tang L, Xu X-W, Doyle JJ, Sang T, Ge S*. 2015. Multiple origins of BBCC allopolyploid species in the rice genus (Oryza). Scientific Reports 5: 14876. DOI: 10.1038/srep14876 [PDF] 

Tang L, Zou X-H, Zhang L-B, Ge S*. 2015. Multilocus species tree analyses resolve the ancient radiation of the subtribe Zizaniinae (Poaceae). Molecular Phylogenetics and Evolution 84: 232-239 [PDF] 

Wu Z*, Tembrock L, Ge S. 2015. Are differences in genomic datasets due to true biological variants or errors in genome assembly: an example from two chloroplast genomes? PLoS One 10(2): e0118019 [PDF] 

Xu X-W*, Wu J-W, Qi M-X, Lu Q-X, Lee P F, Lutz S, Ge S, Wen J*. 2015. Comparative phylogeography of the wild-rice genus Zizania (Poaceae) in eastern Asia and North America. American Journal of Botany 102:239-247 [PDF] 

Han T-S, Wu Q, Hou X-H, Li Z-W, Zou Y-P, Ge S, Guo Y-L*. 2015. Frequent introgressions from multiple diploid species contributed to the success of tetraploid Shepherd’s purse (Capsella bursa-pastoris). Molecular Plant 8: 427-438 [PDF] 

Guo L-B, Qiu J, Han Z, Ye Z, Chen C, Liu C, Xin X, Ye C, Wang Y-Y, Xie H, Wang Y, Bao J, Tang S, Xu J, Gui Y, Fu F, Wang W, Zhang X, Zhu Q, Guang X, Wang C, Cui H, Cai D, Ge S, Tuskan G, Yang X, Qian Q, He S-Y, Wang J, Zhou X, Fan L*. 2015. A host plant genome (Zizania latifolia) after a century-long endophyte infection. Plant Journal 83: 600-609 [PDF] 

Huang Y, Wang X, Ge S, Rao G-Y*. 2015. Divergence and adaptive evolution of the gibberellin oxidase genes in plants. BMC Evolutionary Biology 15: 207 [PDF] 

Ma H-Z, Cai Z, Zhang F-M, Zhang H, Ge S, Dai S-L*, Chen W-L*. 2015. Taxonomic evaluation of Miscanthus nudipes (Poaceae) based on morphological and molecular evidence. Phytotaxa 205: 1-020 [PDF] 

Wen J, Liu JQ, Ge S, Xiang, Q-Y, Zimmer EA. 2015. Phylogenomic approaches to deciphering the tree of life. Journal of Systematics and Evolution 53: 369-370 [PDF] 

景春艳，张富民*，葛颂。2015. 水稻起源与驯化——来自基因组学的证据。 科技导报 33: 27-32 [PDF]

Wang C-H, Zheng X-M, Xu Q, Yuan X-P, Huang L, Zhou H-F, Wei X-H*, Ge S*. 2014. Genetic diversity and classification of Oryza sativa with emphasis on Chinese rice germplasm. Heredity 112: 489-496 [PDF] 

Zhou S-L, Zou X-H, Zhou Z-Q, Liu J, Xu C, Yu J, Wang Q, Zhang D-M, Wang X-Q, Ge S, Sang T, Pan K-Y, Hong D-Y. 2014. Multiple species of wild tree peonies gave rise to the ‘King of Flowers’, Paeonia suffruticosa Andrews.Proceedings of the Royal Society B: Biological Sciences 281: 41687-973-986[PDF] 

Zou X-H, Yang Z, Doyle JA, Ge S*. 2013. Multilocus estimation of divergence times and ancestral population sizes of Oryza species and implications for the diversification of the genus. New Phytologist 198: 1155-1164 [PDF] 

Wu W, Zheng X-M, Lu G, Zhong Z, Gao H, Chen L, Wu C, Wang H-J, Wang Q, Zhou K, Wang J-L, Wu F, Zhang X, Guo X, Cheng Z, Lei C, Lin Q, Jiang L, Wang H, Ge S*, Wan J*. 2013. The association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia. Proceedings of National Academy of Sciences USA 110: 2775-2780 [PDF] 

Sang T*, Ge S. 2013. Understanding rice domestication and implications for cultivar improvement. Current Opinion in Plant Biology 16: 139-146 [PDF] 

Huang L, Du Y-S, Zheng X-M, Liu R, Zhou H-F, Ge S*. 2013. Nucleotide diversity of 11 S seed storage protein gene and its implications for ecological adaptation of Oryza nivara. Journal of Systematics and Evolution 51: 641-651 [PDF] 

Zhou H-F*, Li S-S, Ge S. 2013. Isolation and characterization of microsatellite loci for a bioenergy grass Miscanthus sacchariflorus (Poaceae). Applications in Plant Sciences 1: 1200210 [PDF] 

Ai B, Wang Z-S, Ge S*. 2012. Genome size is not correlated with effective population size in the Oryza species. Evolution 66: 3302-3310 [PDF] 

Wu Z-Q, Ge S*. 2012. Phylogeny of the BEP clade in grasses revisited: evidence from whole genome sequences of chloroplast. Molecular Phylogenetics and Evolution 62: 573-578[PDF] 

Xu X*, Liu X*, Ge S*, Jensen JD*, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R*, Wang J*, Wen W*. 2012. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology 30: 105-111(* co-first authors)[PDF] 

Yan J*, Chen W-L*, Luo F, Ma H-Z, Meng A-P, Li X-W, Zhu M, Li S-S, Zhou H-F, Zhu W-X, Han B, Ge S, Li J-Q, Sang T*. 2012. Variability and adaptability of Miscanthus species evaluated for energy crop domestication. Global Change Biology Bioenergy 4: 49-60 (*co-first authors)[PDF] 

Xue Z, Duan L, Li M, Guo J, Ge S, Dicks J, óMáille P, Osbourn A, Qi X*. 2012. Divergent evolution of oxidosqualene cyclases in plants. New Phytologist 193: 1022-1038[PDF] 

Li X*, Zhu J*, Hu F*, Ge S, Ye M, Xiang H, Zhang G, Zheng X-M, Zhang H, Zhang S, Li Q, Luo R, Yu C, Yu J, Sun J, Zou X, Cao X, Xie X*, Wang J*, Wang W*. 2012. Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression. BMC Genomics 13: 300 [PDF]

Liu P-L, Wan J-N, Guo Y-P, Ge S, Rao G-Y*. 2012. Adaptive evolution of the chrysanthemyl diphospha1 synthase gene involved in irregular monoterpene metabolism. BMC Evol Biol 12: 214 [PDF] 

Lopez-Pujol J*, Zhang F-M, Sun H-Q, Ying T-S, Ge S*. 2011. Centres of plant endemism in China: places for survival or for speciation? Journal of Biogeography 38: 1267-1280[PDF] 

Ge S*, Sang T. 2011. Inappropriate model rejects independent domestications of indica and japonica rice. Proceedings of National Academy of Sciences USA 108(39): E755 (Letter)[PDF] 

Sun H-Q*, Huang B-Q, Yu X-H, Kou Y, An D-J, Luo Y-B, Ge S. 2011. Reproductive isolation and pollination success of rewarding Galearis diantha and non-rewarding Ponerorchis chusua (Orchidaceae). Annals of Botany 107: 39–47 [PDF]

Li Z-M, Zheng X-M, Ge S*. 2011. Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences. Theoretical and Applied Genetics 123: 21-23[PDF] 

Zhou H-F, Li S-S, Ge S*. 2011. Development of microsatellite markers for Miscanthus sinensis (Poaceae) and cross-amplification in other related species. American Journal of Botany 98: e195-e197[PDF] 

Wei R-X, Ge S*. 2011. Evolutionary history and complementary selective relaxation of the duplicated PI genes in grasses. Journal of Integrative Plant Biology 53 (8): 682-693[PDF] 

Zang L-L, Zou X-H, Zhang F-M, Yang Z, Ge S*. 2011. Phylogeny and species delimitation of the C-genome diploid species in Oryza. Journal of Systematics and Evolution 49 (5): 386-395[PDF] 

Lopez-Pujol J*, Zhang F-M, Sun H-Q, Ying T-S, Ge S*. 2011. Mountains of southern China as ‘plant museums’ and ‘plant cradles’: evolutionary and conservation insights. Mountain Research and Development 31: 261-269[PDF] 

Prasad V, Stromberg CAE*, Leache AD, Samant B, Patnaik R, Tang L, Mohabey D M, Ge S, Sahni A. 2011. Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae..Nature Communications 2: 480 (DOI: 10.1038/ncomms1482)[PDF] 

Ford-Lloyd B, Schmidt M, Armstrong S, Barazani O, Engels J, Hadas R, Hammer K, Kell SP, Kang D, Khoshbakht K, Li Y, Long C, Lu B, Ma K, Nguyen VT, Qiu L, Ge S, Wei W, Zhang Z, Maxted N. 2011. Crop wild relatives - Undervalued, underutilized and under threat? BioScience 61:559-565[PDF] 

马洪峥，李珊珊，葛颂，戴思兰，陈文俐. 2011. 能源作物芒属双药芒组SSR引物的筛选及其评价。生物多样性 19: 535-542[PDF] 

Zheng X-M, Ge S*. 2010. Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara). Molecular Ecology 19: 2439-2454 [PDF] 

Sun H-Z, Ge S*. 2010. Molecular evolution of the duplicated TFIIAγ genes in Oryzeae and its relatives. BMC Evolutionary Biology 10: 128 [PDF] 

Tang L, Zou X-H, Achoundong G, Potgieter C, Second G, Zhang D-Y, Ge S*. 2010. Phylogeny and biogeography of the rice tribe (Oryzeae): Evidence from combined analysis of 20 chloroplast fragments. Molecular Phylogenetics and Evolution 54: 266-277 [PDF] 

Bao Y*, Wendel J F, Ge S. 2010. Multiple patterns of rDNA evolution following polyploidy in Oryza. Molecular Phylogenetics and Evolution 55: 136-142 [PDF] 

Wang E, Xun X, Zhang L, Zhang H, Lin L, Wang Q, Li Q, Ge S, Lu B-R, Wang, W, He, Z. 2010. Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication. BMC Evolutionary Biology 10:108 [PDF] 

Xu X, Walters C, Antolin M F, Alexander M L, Lutz S, Ge S, Wen J. 2010. Phylogeny and biogeography of the eastern Asian–North American disjunct wild-rice genus (Zizania L., Poaceae). Molecular Phylogenetics and Evolution 55: 1008-1017 [PDF] 

Tian S, Lopez-Pujol J, Wang H-W, Ge S, Zhang Z-Y*. 2010. Molecular evidence for glacial expansion and interglacial retreat during Quaternary climatic changes in a montane temperate pine (Pinus kwangtungensis Chun ex Tsiang) in southern China. Plant Systematics and Evolution 284: 219-229 [PDF]

Sun H-Q*, Alexandersson R, Ge S. 2010. Positive effects of flower abundance and synchronous flowering on pollination success, and pollinia dispersal in rewardless Changnienia amoena (Orchidaceae). Biological Journal of the Linnean Society 99: 477-488 [PDF] 

Wang Z-S, Sun H-Q, Wang H-W, Ge S*. 2010. Isolation and characterization of 50 nuclear microsatellite markers for Cathaya argyrophylla, a Chinese endemic conifer. American Journal of Botany 97: e117-e120[PDF] 

Ge S*, Hong D-Y. 2010. Biosystematic studies on Adenophora potaninii Korsh. complex (Campanulaceae). V. A taxonomic treatment. Journal of Systematics and Evolution 48 (6): 445–454[PDF] 

Hong D-Y*, Ge S. 2010. Taxonomic notes on the genus Adenophora (Campanulaceae) in China. Novon 20: 426–428[PDF] 

Tang M*, Yu FH, Jin XB, Ge S. 2010. High genetic diversity in the naturally rare plant Taihangia rupestris Yu et Li (Rosaceae) dwelling only cliff faces. Polish Journal of Ecology 58(2): 241-248 

孙红正，葛颂*. 2010. 重复基因的进化－回顾与进展。植物学报 45:13-22 [PDF] 

Yang Y-H, Zhang F-M, Ge S*. 2009. Evolutionary rate patterns of the gibberellin pathway genes. BMC Evolutionary Biology 9: 206 [PDF]

Zhang L-B, Zhu Q, Wu Z-Q, Ross-Ibarra J, Gaut B S, Ge S*, Sang T. 2009. Fast fixation of non-shattering allele but slow domestication of rice. New Phytologist: 184(3): 708-720 [PDF]

Wang B, Ding Z, Liu W, Pan J, Li C, Ge S, Zhang D*. 2009. Polyploid evolution in Oryza officinalis complex of the genus Oryza. BMC Evolutionary Biology 9: 250 [PDF]

Peng ZY, HY Zhang, TT Liu, KM Dzikiewicz, SG Li, XF Wang, GC Hu, ZG Zhu, XH Wei, QH Zhu, ZX Sun, S Ge, LG Ma, L Li, XW Deng*. 2009. Characterization of the genome expression trends in the heading-stage panicle of six rice lineages. Genomics 93: 169-178 [PDF]

Sun H-Q*, Cheng J, Zhang F-M, Luo Y-B, Ge S. 2009. Reproductive success of non-rewarding Cypripedium japonicum benefits from low spatial dispersion pattern and asynchronous flowering. Annals of Botany 103: 1227-1237 [PDF]

Wang L, Hao L, Li X, Hu S, Ge S, Yu J*. 2009. SNP deserts of Asian cultivated rice: genomic regions under domestication. Journal of Evolutionary Biology 22: 751-761 [PDF]

Li Z, Zhang H, Wang X, Ge S, Gu X, Gao G, Luo J*. 2009. Expression pattern divergence of duplicated genes in rice. BMC Bioinformatics 10: S8 [PDF]

Zou X-H, Zhang F-M, Zhang J-G, Zang L-L, Tang L, Wang J, Sang T, Ge S*. 2008. Analysis of 142 genes resolves the rapid diversification of the rice genus. Genome Biology 9: R49  [PDF]

Xu X-W, Ke W-D, Yu X-P, Wen J, Ge S*. 2008. A preliminary study on population genetic structure and phylogeography of the wild and cultivated Zizania latifolia (Poaceae) based on Adh1a sequences. Theoretical and Applied Genetics 116: 835–843 [PDF]

Tian S, Li D-R, Wang H-W, Ge S, Zhang Z-Y.* 2008. Tian S, Luo L-C, Ge S, Zhang Z-Y*. 2008. Clear genetic structure of Pinus kwangtungensis (Pinaceae) revealed by a plastid DNA fragment with a novel minisatellite. Annals of Botany 102: 69-78 [PDF]

Lopez-Pujol1 J, Zhang F-M, Ge S. 2008. No correlation between heterozygosity and fitness in the narrow endemic and critically endangered Clematis acerifolia (Ranunculaceae). Biochemical Genetics 46: 433-445 [PDF]

Guo A-Y, Zhu Q-H, Gu X, Ge S, Yang J, Luo J. 2008. Genome-wide identification and evolutionary analysis of the plant specific SBP transcription factor family. Gene 418: 1-8. [PDF]

Vaughan D A, Ge S, Kaga A, Tomooka N. 2008. Phylogeny and biogeography of the genus Oryza. In: Hirano H-Y; Hirai A; Sano Y; Sasaki T (eds.) Rice Biology in the Genomics Era, Biotechnology in Agriculture and Forestry. Vol. 62. Springer, pp. 219-234. [PDF]

Yuan Q-J, Zhang Z-Y, Peng H, Ge S. 2008. Chloroplast phylogeography of Dipentodon (Dipentodontaceae) in southwest China and northern Vietnam. Molecular Ecology 17: 1054-1065 [PDF]

Zhou H-F, Zheng X-M, Wei R-X, Second G, Vaughan D A, Ge S*. 2008. Contrasting population genetic structure and gene flow between Oryza rufipogon and Oryza nivara. Theoretical and Applied Genetics 117: 1181-1189 [PDF]

包颖，葛颂  2008. 稻属Oryza多倍体的研究历史及存在问题. 植物分类学报 46: 3-12 [PDF]

邹新慧，葛颂* 2008. 基因树冲突与系统发育基因组学研究。植物分类学报 46: 795-807  [PDF]

Zhang L-B, Ge S*. 2007. Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives. Molecular Biology and Evolution 24: 769-783 [PDF]

Zhu Q, Zheng X, Luo J, Gaut B S, Ge S*. 2007. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Molecular Biology and Evolution 24: 875-888 [PDF]

Zhang Y-P, Ge S. 2007. Molecular evolution study in China: progress and future promise. Philosophical Transactions of the Royal Society B: Biological Sciences 362: 973-986 [PDF]

Sang T, Ge S. 2007. Genetics and phylogenetics of rice domestication. Current Opinion in Genetics and Developments 17: 533-538 [PDF]

 Zhang Z-Y, Zheng X-M, Ge S*. 2007. Population genetic structure of Vitex negundo (Verbenaceae) in Three-Gorge Area of the Yangtze River: the impact of rivers on gene flow in plants. Biochemical Systematics and Ecology 35:506-516 [PDF]

Shi X, Wang X, Li Z, Zhu Q, Yang J, Ge S*, Luo J*. 2007. Evidence that natural selection is the primary cause of the GC content variation in rice genes. Journal of Integrative Plant Biology 49: 1393-1399 [PDF]

Sang T, Ge S. 2007. The puzzle of rice domestication. Journal of Integrative Plant Biology 49: 760-768 [PDF]

王红卫，邓辉胜，谭海明，覃琨，张定亨，葛颂* 2007. 银杉花粉生命力及其变异. 植物生态学报 31: 1199-1204 [PDF]

Wang H-W, Ge S*. 2006. Phylogeography of the endangered Cathaya argyrophylla (Pinaceae) inferred from sequence variation of mitochondrial and nuclear DNA. Molecular Ecology 15: 4109-4123 [PDF]

Lopez-Pujol J*, Zhang F-M, Ge S. 2006. Plant biodiversity of China: richness, threatens and conservation. Biodiversity and Conservation 15: 3983-4026 [PDF]

Bao Y, Zhou H-F, Hong D-Y, Ge S*. 2006. Genetic diversity and evolutionary relationships of Oryza species with the B- and C-genomes as revealed by SSR markers. Journal of Plant Biology 49: 339-347 [PDF]

Sun K, Chen W, Ma R-J, Chen X, Li A, Ge S*. 2006. Genetic variation in Hippophae rhamnoides subsp. sinensis (Elaeagnaceae) revealed by RAPD markers. Biochemical Genetics 44: 186-197 [PDF]

Wang X-Y, Shi X-L, Li Z, Zhu Q-H, Kong L, Tang W, Ge S, Luo J-C. 2006. Statistical inference of chromosomal homology based on gene colinearity and applications to arabidopsis and rice. BMC Bioinformatics 7: 447 [PDF]

Shi X-L, Wang X-Y, Li Z, Zhu Q-H, Tang W, Ge S*, Luo J-C*. 2006. Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias. Gene 376: 199-206 [PDF]

Li A, Ge S*. 2006. Genetic variation in Changnienia amoena, an endangered orchid endemic to China. Plant Systematics and Evolution 258: 251-260 [PDF]

Sun H-Q, Luo Y-B, Alexandersson R, Ge S*. 2006. Pollination and pollen flow of the endanged orchid, Changnienia amoena (Orchidaceae). Botanical Journal of Linnean Society 150, 165-175[PDF]

Qian W*, Ge S, Hong D-Y, 2006. Genetic diversity in accessions of wild rice Oryza granulata from South and Southeast Asia, Genetic Resources and Crop Evolution 53: 197-204 [PDF]

Liu Q, Ge S, Tang H, Zhang X, Zhu G, Lu B-R*. 2006. Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal ITS and chloroplast trnL-F sequences. New Phytologist 170: 411-420 [PDF]

郭亚龙, 葛颂*. 2006. 稻族的系统发育及其研究进展. 植物分类学报 44(2): 211-230 [PDF]

Zhu Q-H, Ge S*. 2005. Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. New Phytologist 167: 249-265 [PDF]

Guo Y-L, Ge S* 2005. Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochrondrial and nuclear genomes. American Journal of Botany 92:1548-1558. [PDF]

Lopez-Pujol J, Zhang F-M, Ge S, 2005. Population Genetics conservation of the critically endangered Clematis acerifolia (Ranunculaceae). Canadian Journal of Botany 83: 1248-1256[PDF]

Gao L-Z, Hong D-Y, Ge S. 2005. Patterns of allozyme variation at two stages of the life history in wild rice Oryza rufipogon and conservation genetic implications. Biodiversity and Conservation. 14: 2821-2834 [PDF]

Ge S, Guo Y-L, Zhu Q-H. 2005. Molecular phylogeny and divergence of the rice tribe (Oryzeae), with special reference to the origin of the genus Oryza. In Toriyama K, Heong K L, Hardy B (eds), Rice is life: scientific perspectives for the 21st century. Philippines: IRRI. Pp. 40-44. [PDF]

Lu B-R*, Ge S. 2005. Taxonomic treatment of Porteresia coarctata (Poaceae: Oryzeae). Nordical Journal of Botany 23: 555-558 [PDF]

Zhang F-M, Chen W-L, Yang Q-E, Ge S*. 2005. RAPD variation and population genetic structure in the Acomitum delavayi complex (Ranunculaceae), a diploid species group distributed mainly in the Hengduan Mountains of China. Plant Systematics and Evolution 254: 39-48 [PDF]

Ren Y*, Liu X, Ge S. 2005. Low genetic diversity among populations of the rare Chinese endemic Kingdonia uniflora revealed by RAPD-analysis. Israel Journal of Plant Science. 53: 65-73

俞国琴，郑云飞，石春海，葛颂*. 2005. 古DNA及其在生物系统与进化研究中的应用。植物学通报 22: 267-275 [PDF]

Wang X, Shi X, Hao B, Ge S*, Luo J*. 2005. Evidence that rice and other cereals have a common ancient tetraploid progenitor. New Phytologist 165: 937-946 [PDF]

Bao Y, Lu B R, Ge S*. 2005. Identification of genomic constitutions of Oryza species with the B and C genomes species by the PCR-RFLP method. Genetic Resources and Crop Evolution 52: 69-76 [PDF]

Yu G-Q, Bao Y, Shi C-H, Dong C-Q, Ge S*. 2005. Genetic diversity and population differentiation of Liaoning weedy rice detected by RAPD and SSR markers. Biochemical Genetics 43: 261-270 [PDF]

孙海芹，李昂，班玮，郑晓明，葛颂*. 2005. 独花兰的形态变异及其适应意义。生物多样性 13: 376-386 [PDF]

蒋志刚，葛颂. 2005. 探索长江流域物种濒危机制与保护对策。生物多样性 13: 367-375 [PDF全文]

Bao Y, Ge S*. 2004. Origin and Phylogeny of Oryza species with the CD genome based on multiple-gene sequence data. Plant Systematics and Evolution 249: 55-66 [PDF]

郭亚龙，葛颂*. 2004. 线粒体nad1基因内含子在稻族系统学研究中的价值--- 兼论Porteresia的系统位置。植物分类学报 42(4): 333-344  [PDF]

Zhang F-M, Kong H-Z, Ge S*. 2003. Allozyme variation and population differentiation of Aconitum delavayi complex (Ranunculaceae) in Hengduan Mountains of China. Biochemical Genetics 41(1/2): 47-55 [PDF]

Sun K, Ma R-J, Chen X-L, Li C-B, Ge S*. 2003. Hybrid origin of the diploid species Hippophae goniocarpa Lian, Chen & Sun, evidence from the internal transcribed spacers (ITS) of nuclear rDNA. Belgian Journal of Botany 136(1): 91-96  

Zhou H-F, Xie Z-W, Ge S*. 2003. Microsatellite analysis of genetic diversity and population genetic structure of a wild rice (Oryza rufipogon Griff.) in China. Theoretical and Applied Genetics 107: 332-339 [PDF]

Sun H-Q, Luo Y-B, Ge S*. 2003. A preliminary study on pollination biology of an endangered orchid, Changnienia amoena. Acta Botanica Sinica 45(9): 1019-1023 [PDF]

Bao Y, Ge S*. 2003. Identification of Oryza species with the CD genome based on RFLP analysis of nuclear ribosomal ITS sequences. Acta Botanica Sinica 45(7): 762-765 [PDF]

Funamoto T, Kondo K, Hong D-Y, Ge S, Mao J-F, Ogura H. 2003. A comparative chromosomal study of three Rhodiola species (Crassulaceae) collected in central Tianshan Mountains, Xinjiang, China. Chromosome Science 7; 55-60

熊高明, 谢宗强, 熊小刚, 樊大勇, 葛 颂, 2003.神农架南坡珍稀植物独花兰的生物学及群落特征。生态学报 23：173-179

张富民，葛 颂*，陈文莉. 2003. 横断山区紫乌头复合体nrDNA的ITS序列与系统发育分析。植物分类学报 41: 220-228   [PDF]

包颖，葛 颂*. 2003.利用多基因序列探讨稻属药稻复合体二倍体物种的系统发育关系。植物分类学报 41: 497-508   [PDF]

邹喻苹,葛 颂. 2003. 新一代分子标记－SNPs及其应用。生物多样性 11: 370-382   [PDF]

Ge S, Li A, Lu B-R, Zhang S-Z, Hong D-Y. 2002. A phylogeny of the rice tribe Oryzaeae based on matK sequence data. American Journal of Botany 89(12): 1967-1972. [PDF]

Gao L, Ge S, Hong D-Y, Lin R-S, Tao G-D, Xu Z-F. 2002. Allozyme variation and conservation genetics of common wild rice (Oryza rufipogon Griff.) in Yunnan, China. Euphytica 124(3): 273-281. [PDF]

Li A, Luo Y-B, Ge S*. 2002. A preliminary study on conservation genetics of an endangered orchid (Paphiopedilum micranthus) from southwestern China. Biochemical Genetics 40(5/6): 195-201. [PDF]

Li A, Luo Y-B, Xiong Z-T, Ge S*. 2002. A preliminary study on conservation genetics of three endangered orchid species. Acta Botanica Sinica 44(2): 250-252. [PDF]

Sun K, Chen X-L, Ma R-J, Li C-B, Wang Q, Ge S*. 2002. Molecular phylogenetics of Hippophae L. (Elaeagnaceae) based on the internal transcribed spacer (ITS) sequences of nrDNA. Plant Systematics and Evolution 235(1-4): 121-134.   [PDF]

葛 颂，洪德元，2002. 生物进化研究的现状和展望. 见：《展望21世纪的生命科学》编写组（编著），展望21世纪的生命科学。pp.110-129. 

李 昂，葛 颂*，2002，植物保护遗传学研究进展。生物多样性 10(1): 61-71   [PDF]

李 昂, 罗毅波,葛 颂*, 2002. 采用空间自相关分析研究两种兰科植物的群体遗传结构。生物多样性 10(3):249-257 [PDF]

熊治廷，吴 剑，李 弈，葛 颂，赵子恩，桂先群，程增林，黄遵义，2002. 独花兰野生种群研究--开花与营养体状态的关系. 植物学通报 19(1): 87-91   [PDF]

张富民，葛 颂*，2002.群体遗传学研究中的数据处理方法（I）—RAPD数据的AMOVA分析。生物多样性 10(4): 438-444 [PDF]

Ge S, Sang T, Lu B-R, Hong D-Y. 2001. Rapid and reliable identification of rice genomes by RFLP analysis of PCR-amplified Adh genes. Genome 44：1136-1142 [PDF]

Gao L, Ge S, Hong D-Y. 2001. High levels of genetic differentiation of Oryza officinalis Wall. et Watt. From China. The Journal of Heredity 92(6): 511-516.  [PDF]

Gao L, Ge S, Hong D-Y, 2001, Intra-population genetic structure and gene flow of Oryza rufipogon Griff. Journal of Plant Research 114: 107-113 [PDF]

Ge S, Sang T, Lu B-R, Hong D-Y. 2001. Phylogeny of the genus Oryza as revealed by molecular approaches. In: Khush G S, Brar D S, Hardy B (eds) Rice Genetics IV. Proceedings of the Fourth International Rice Genetics Symposium. Los Banos (Phillipines): IRRI. pp. 89-105.

He T H, Rao G Y, You R L, Ge S, Zhang D M. 2001. Genetic structure, neterozygosity variation between generations of Ophiopogon xylorrhizus (Liliaceae s.l.), an endemic species in Yunnan, SW China. Biochemical Genetics 39(3/4): 93-98. [PDF]

Li A, Ge S*, 2001. Genetic variation and clonal diversity of Psammochloa villosa detected by ISSR markers. Annals of Botany 87(5): 585-590. [PDF]

Li C B, Zhang D M, Ge S, Lu B R, Hong D Y. 2001. Identification of genome constitution of Oryza malampuzhaensis, O. minuta, and O. punctata by multicolor genomic in situ hybridization. Theoretical and Applied Genetics 103(2/3): 197-203 [PDF]

Li C B, Zhang D M, Ge S, Lu B R, Hong D Y. 2001. Genomic differentiation and inter-genomic relationships among C, E and D genomes in Oryza officinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridization. Theoretical and Applied Genetics 103(2/3): 204-211. [PDF]

Qian W, Ge S*, Hong D-Y. 2001. Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theoretical and Applied Genetics 102：440-449 [PDF]

Xie Z-W, Lu Y-Q, Ge S*, Hong D-Y, Li F-Z. 2001, Clonality in wild rice, Oryza rufipogon (Poaceae) and its implications for conservation managements. American Journal of Botany 88(6): 1058-1064. [PDF]

何田华，葛 颂，2001. 植物种群交配系统、亲本分析以及基因流动研究. 植物生态学报 25(2): 144-154.   [PDF]

何川生, 何兴金, 葛 颂, 李天飞, 许凌云, 许美玲, 许介眉, 2001. 烤烟品种资源的RAPD分析, 植物学报 43(6): 610-614.  [PDF]

卢宝荣，葛 颂，桑 涛，陈家宽，洪德元，2001. 稻属分类的现状及存在问题。植物分类学报 39(4): 373-388. [PDF]

钱 韦,谢中稳,葛 颂*,洪德元, 2001.中国疣粒野生稻的分布、濒危现状和保护前景。植物学报 43（12）：1279-1287.  [PDF]

钱 韦，葛 颂，2001, 居群遗传结构研究中显性标记数据分析方法初探。遗传学报 28(3)：244-255.   [PDF]

Gao L, Ge S, Hong D-Y. 2000. Allozyme variation and population genetic structure of common wild rice, Oryza rufipogon Griff. in China. Theoretical and Applied Genetics 101(3): 494-502 [PDF].

Gao L, Ge S, Hong D-Y. 2000. Low level of genetic diversity within population and high differentiation among populations of a wild rice, Oryza granulata from China. International Journal of Plant Sciences 161(4): 691-697. [PDF]

Gao L-Z, Chen W, Jiang W, Ge S, Hong D-Y, Wang X. 2000. Genetic erosion in northern marginal population of the common wild rice Oryza granulata Griff. and its conservation, revealed by the change of popualtion genetic structure. Hereditas 133: 47-53.  

He T-H, Rao G-Y, You R-L, Ge S, Hong D-Y. 2000. Spatial autocorrelation of genetic variation in three strands of Ophiopogon xylorrhizus (Liliaceae s. l.). Annals of Botany 86:113-121. [PDF]

He T-H, Rao G-Y, You R-L, Ge S, Zhang D-M. 2000. Genetic diversity of widespread Ophiopogon intermedius, a comparison with endangered O. xylorrhizus. Biological Conservation 96:253-257. [PDF]

Li C B, Zhang D M, Ge S, Lu B R, Hong D Y, 2000. Detection of differentiation among BB, CC and EE genomes in the genus Oryza by two-probe genomic in situ hybridzation. Acta Botanica Sinica 42(9): 988-990.  [PDF]

Li C-B, Zhang D-M, Ge S, Lu B-R, Hong D-Y. 2000. Relationships among the CC, DD, and EE genomes in Oryza officinalis complex detected by two-probe genomic in situ hybridization. International Rice Research Notes 25(3): 18-20 [PDF]

Li C-B, Zhang D-M, Ge S, Hong D-Y. 2000. Identification of genomic constitution of three tetraploid Oryza species through two-probe genomic in situ hybridization. International Rice Research Notes 25(2): 19-22.

Xie Z-W, Ge S, Wang K-Q, Hong D-Y. 2000. Evaluation of in situ conservation of Oryza rufipogon populations using RAPD markers. International Rice Research Notes 25(2): 17-19.

Yu H, Ge S*, Hong D-Y. 2000. Allozyme diversity and population genetic structure of Pinus densata Master in northwestern Yunnan, China. Biochemical Genetics 38(5/6): 138-146. [PDF]

高立志，葛 颂，洪德元，2000, 普通野生稻Oryza rufipogon生态分化的初探。作物学报 26(2): 210-216. 

葛 颂, 2000. 植物的物种形成及其研究进展。见: 李承森主编，植物科学进展(第三卷)。pp. 3-15, 北京：高等教育出版社。

葛 颂, 洪德元，2000．植物物种生物学．见邹承鲁（主编）当代生物学．中国致公出版社，463-464.

何兴金，葛 颂，许介眉，洪德元. 2000，葱属系统发育的PCR-RFLP分析。中国科学(C辑) 30:183-191.

李 昂，王可青，葛 颂*，2000，不同采样策略对细距堇菜遗传多样性估算的影响。植物学报 42(10):1069-1074.  [PDF]

钱 韦，葛 颂*，洪德元，2000，采用RAPD和ISSR标记探讨中国疣粒野生稻的遗传多样性。植物学报 42(7):741-750. [PDF]

吴世安，吕海亮，杨继，饶广远，尤瑞麟，葛 颂，钟杨，2000，叶绿体DNA片段的RFLP分析在黄精族系统学研究中的应用。植物分类学报 38(2):97-110.  [PDF]

虞 泓，葛 颂*，黄瑞复，姜汉侨.2000. 云南松及其近缘种的遗传变异与亲缘关系初探。植物学报 42(1):107-110.  [PDF]

Ge S, Sang T, Lu B-R, Hong D-Y. 1999. Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proceedings of National Academy of Sciences USA 96: 14400-14405. [PDF]

Ge S, Wang K Q, Hong D Y, Zhang W H, Zu Y G, 1999, Comparisons of genetic diversity in the endangered Adenophora lobophylla and its widespread congener, A. potaninii. Conservation Biology 13(3): 509-513. [PDF]

Ge S, Oliveira G C X, Schaal B A, Gao L-Z, Hong D-Y. 1999. RAPD variation within and between natural populations of wild rice (Oryza rufipogon) from China and Brazil. Heredity 82(6): 638-644. [PDF]

Ge S, Hong D-Y, 1999, A new species of Chinese Adenophora (Campanulaceae) Novon 9(1): 46.

Ding K-Y, Ge S, Yu Z-H, Hong D-Y. 1999. Allozyme variation in the diploid (A genome) populations of Scilla scilloides (Hyacinthaceae). Plant Systematics and Evolution 218: 23-31.  [PDF]

Hizume M, Shibata F, Kondo K, Hoshi Y, Kondo T, Ge S, Yang Q-E, Hong D-Y. 1999. Identification of chromosomes in two Chinese spruce species by multicolor fluorescence in situ hybridization. Chromosome Science 3: 37-41.

Li C-L, Wang Q, Jiang S-Y, Ge S, Wang K-Q. 1999. Genetic diversity of allozymes in populations of Cycas panzhihuaensis. In Chen J-R. (ed.) Biology and Conservation of Cycas – Proceedings of 4^th International Conference on Cycas Biology. Pp. 323-327, International Academic Publishers, Beijing.

Xie Z-W, Ge S*, Hong D-Y. 1999. Preparation of DNA from silica gel dried mini-amount of leaves of Oryza rufipogon for RAPD study and total DNA bank construction. Acta Botanica Sinica 41(8): 884-890.   [PDF]

高立志，葛 颂，洪德元，陶国达，许再富，1999，云南疣粒野生稻的群体遗传结构及其原位保护的意义。中国科学(C辑) 29(3): 297-302.

Gao L-Z, Ge S, Hong D-Y, Zhang J-W, Luo Q-Y, Tao G-D, Xu Z-F, 1999, A study on population genetic structure of Oryza meyeriana (Zoll. et Mor. ex Steud. ) Bail. from Yunnan and its in situ conservation significance. Science in China 42(1): 102-108.

葛 颂，洪德元, 1999, 濒危植物裂叶沙参及其广布种泡沙参遗传多样性的对比研究。遗传学报 26: 410-417. [PDF]

葛 颂，王可青，董 鸣，1999，毛乌素沙地根茎灌木羊柴的遗传多样性和克隆结构，植物学报 41(3): 301-306    [PDF]

胡小辉，陈家宽，王建波，何国庆，葛 颂，1999，长喙毛茛泽泻遗传多样性及其与繁育系统的关系。云南植物研究 21(2)：232-238. 

葛 颂，1999，也谈“Biosystematics”的中文译名以及由此引发的思考。植物分类学报 37(6): 621-626.    [PDF]

王可青，葛 颂，董 鸣，1999，根茎禾草沙鞭的等位酶变异及克隆多样性。植物学报 41(5): 537-540.    [PDF]

Ge S, Hong D-Y, Wang H-Q, Liu Z-Y, Zhang C-M, 1998, Population genetic structure and conservation of an endangered conifer, Cathaya argyrophylla (Pinaceae). International Journal of Plant Sciences 159(2): 351-357. [PDF]

Ding K-Y, Ge S, Yu Z-H, Hong D-Y, 1998, Cytotype variation and cytogeography of Scilla sinensis (Louriro) Merrill (Hyacinthaceae) in China. Hereditas 129(2): 151-160.

He T-H, Rao G-Y, You R-L, Ge S, 1998, Mating system of Ophiopogon xylorrhizus (Liliaceae), an endangered species in SW China. International Journal of Plant Sciences 159(3): 440-445. [PDF]

Kondo K, Tanaka R, Hizume M, Kokubugata G, Hong D-Y, Ge S, Yang Q-E, 1998, Cytogenetic studies on wild Chrysanthemum sensu lato in China VI. Karyomorphological characters of five species of Ajania and each one species of Brachanthemum, Dendranthema, Elachanthemum, Phaeostigma and Tanacetum in highlands of Gansu, Qinghai and Sichuan Provinces. Journal of Japanese Botany 73: 128-136.

葛 颂，1998，植物群体遗传结构研究的回顾和展望。见: 李承森主编，植物科学进展(第一卷)。pp. 1-15, 北京：高等教育出版社。

葛 颂，洪德元，1998，泡沙参复合体(桔梗科)的物种生物学研究, IV.等位酶水平的变异和分化。植物分类学报 36(6): 581-589.  [PDF]

何兴金，葛 颂，许介眉，洪德元, 1998, 葱属系统发育的PCR-RFLP分析初报。植物学报 40(11): 1083-1086  [PDF]

王可青，葛 颂，1998，国产沙参属五个种的核型研究。云南植物研究 20(1): 58-62.

周其兴，葛 颂，顾志建，岳中枢，1998，中国红豆杉属及其近缘植物的遗传变异和亲缘关系研究。植物分类学报 36(5): 323-332.   [PDF]

Ge S, Zhang D-M, Wang H-Q, Rao G-Y, 1997, Allozyme variation in Ophiopogon xylorrhizus, an extreme endemic species of Yunnan, China. Conservation Biology 11(2): 562-565. [PDF]

葛 颂，王海群，张灿明，洪德元，1997，八面山银杉林的遗传多样性和群体分化。植物学报 39(3): 266-271 [PDF]

郭延平，潘开玉，葛 颂，1997，濒危植物裂叶沙参的大小孢子发生及雌雄配子体发育。植物分类学报 35(4): 293-296. [PDF]

葛 颂，Schaal B A，洪德元，1997，用核糖体DNA的ITS序列探讨裂叶沙参的系统位置---兼论ITS片断在沙参属系统学研究中的价值。植物分类学报 35(5): 385-395. [PDF]

葛 颂，1997，遗传多样性。见：蒋志刚、马克平、韩兴国（主编）保护生物学。pp. 11-19，杭州：浙江科学技术出版社 [PDF]