1983年获西南农学院（现西南大学）学士学位；1989年和1994年分别获中国科学院植物研究所硕士和博士学位。1983年至1986年在甘肃省农业厅工作；1989年到中国科学院植物研究所工作至今，在此期间，1996至1998年在日本筑波大学基因研究中心从事博士后研究，1999至2001年在日本国立农业科学研究所作访问学者。兼任中国治沙暨沙产业学会木本饲料专业委员会副主任委员、中国农村专业技术协会第六届理事会理事、中国乡村发展志愿服务促进会专家委员会专家、中国优质农产品开发服务协会专家委员会委员、中国科学院植物研究所技术委员会委员等。先后主持或参加国家重点研发计划、转基因专项、973和863项目，国家基金委重点和面上基金、中国科学院知识创新重点项目等20多项。获省部奖励4项，其它奖励和表彰4项。在Mol. Plant、J. Integr. Plant Biol.、Mol. Cell. Proteomics、J. Proteome Research等学术期刊发表研究论文120余篇，其中SCI论文90多篇；出版编著5部、译著1部；授权发明专利18件，其中转化专利8项；培育杂交构树品种2个；培养硕士、博士研究生40多名，博士后2名。
主要研究方向：
1. 植物逆境信号应答蛋白质组学解析；
2. 植物重要关键基因克隆及其功能研究；
3. 杂交构树种质创新与产业化技术研发及其示范推广。
主持和参加的科研项目：
[1] “杂交构树产业关键技术集成研究与应用示范”，国家重点研发计划项目（2021.06-2023.12），项目主持人。
[2] “杂交构树低温应答蛋白激酶/磷酸酶网络构建及枢纽蛋白调控机制研究”，国家自然科学基金面上项目（2019.01-2022.12），项目主持人。
[3] “杂交构树种养一体化示范工程”，中国科学院科技服务网络计划区域中心项目（2019-2020），项目主持人。
[4] “杂交构树‘林-料-畜’一体化产业扶贫示范工程”，中国科学院科技扶贫项目（2016-2019），项目主持人。
[5] “杂交构树干细胞繁育技术研究及苗木产业化示范”，北京市科委国家现代农业科技城成果惠民科技示范工程专项-课题（2015-2016），课题主持人。
[6] “耐盐构树栽培繁育”，中国科学院科技服务网络计划-子课题（2014-2016），子课题主持人。
[7] “麻疯树耐寒转录因子基因克隆及其功能研究”，国家自然科学基金面上项目（2013-2016），项目主持人。
[8] “优质、丰产双流冬草莓选育及其产业化示范”，四川省科技支撑计划（2012-2014），项目主持人。
[9] “耐盐植物筛选繁育与适应性种植滨海盐碱地绿化技术集成与示范”，中国科学院知识创新工程重要方向项目（2011-2014），项目共同主持人。
[10] “水稻与根瘤菌互作用机制”，科技部“973”计划-子课题（2010-2014），子课题主持人。
[11] “水稻抗寒性状形成重要关键基因克隆及其功能验证”，科技部其它项目-子课题（2009-2011），子课题主持人。
[12] “麻疯树种子油脂合成蛋白质组学解析”，国家自然科学基金重点项目-课题（2008-2011），课题主持人。
[13] “滨海耐盐构树选育与种植试验示范”，中国科学院科技行动计划项目（2009-2010），项目主持人。
[14] “麻疯树抗性机制”，中国科学院知识创新工程重要方向项目-课题，课题主持人。
[15] “水稻灌浆期抗低温性状形成的代谢途径解析”，科技部“863”项目（2007-2010），项目主持人。
[16] “枯草芽孢杆菌KB-1111以及新型植物生防与促生剂生产技术的引进”，农业部“948”项目（2004-2007），项目主持人。
[17] “水稻应答赤霉素的蛋白质组学研究”，国家自然科学基金面上项目（2005-2007），项目主持人。
[18] “我国特有苜蓿根瘤菌和其宿主植物苜蓿的共生固氮功能基因组”，科技部“973”项目-课题（2002-2006），课题主持人。
[19] “DREB基因克隆及其功能研究”，科技部“863”项目-课题（2002-2005），课题主持人。
[20] “水稻对环境信号应答的蛋白组学研究”，中国科学院知识创新工程重要方向项目-课题（2002-2005），课题主持人。
获奖及荣誉：
[1] 1996年，“稀有濒危植物的迁地保护”获中国科学院科技进步三等奖（第4完成人）。
[2] 2008年，“杂交构树工厂化快繁育苗技术”获大连市科技进步三等奖（第1完成人）。
[3] 2017年，“边坡与废弃地生态修复综合技术创新及应用”获广东省科学技术二等奖（第7完成人）。
[4] 2019年，“边坡与废弃地生态修复关键技术及应用”获中华人民共和国农业农村部2018-2019年度神农中华农业科技奖科学研究类成果三等奖（第7完成人）。
[5] 2019年，获河南省人民政府.中国科学院“2019年度省院合作科技成果转化先进个人”。
[6] 2020年，获中国科学院“2019年中国科学院年度团队提名团队”。
[7] 2021年，“杂交构树科技产业助农扶贫”获中国技术市场协会第三届三农科技服务金桥奖个人优秀奖。
[8] 2022年，“杂交构树研发及其产业化推广”获中国科学院科技创新发展中心、北京市科学技术委员会、中关村科技园区管理委员会第十届中国科学院科技成果在京转化先进团队科技成果转化奖二等奖（第1完成人）。
研究论文（注*为通讯作者）：
2023
Yu ZP, Huang X, Wen SH, Cao HJ, Wang N, Shen SH*, Ding MQ*. 2023. Alternative splicing under cold stress in Paper mulberry. Plants, 2023, 12(23), 3950.
Hu YM, Tang F, Zhang D, Shen SH*, Peng XJ*. 2023. Integrating genome-wide association and transcriptome analysis to provide molecular insights into heterophylly and eco-adaptability in woody plants. Horticulture Research, 2023, 10: uhad212.
Zhang XK, Wang FF, Yang NH, Chen NZ, Hu YM, Peng XJ*, Shen SH*. 2023. Bioinformatics analysis and function prediction of NBS-LRR gene family in Broussonetia papyrifera. Biotechnology Letters, 45(1): 13-31.
2022
Hu YM, Peng XJ*, Shen SH* 2022. Identification and investigation of the genetic variations and candidate genes responsible for seed weight via GWAS in Paper mulberry. International Journal of Molecular Sciences, 23：12520.
Tang F, Zhang D, Chen NZ, Peng XJ*, Shen SH*. 2022. Genome-wide analysis of BpYABs and function identification involving in the leaf and silique development in transgenic Arabidopsis. International Journal of Molecular Sciences, 23: 1670.
Su YL, Peng XJ*, Shen SH*. 2022. Identification of leucine-rich repeat receptor-like protein kinase (LRR-RLK) genes in paper mulberry and their potential roles in response to cold stress. Computational Biology and Chemistry, 97: 107622.
Wang FF, Chen NZ*, Shen SH*. 2022. iTRAQ-Based quantitative proteomics analysis reveals the mechanism of golden-yellow leaf mutant in hybrid paper mulberry. International Journal of Molecular Sciences, 23: 127.
2021
Wang FF, Su YL, Chen NZ*, Shen SH*. 2021. Genome- wide analysis of the UGT gene family and identification of flavonoids in Broussonetia papyrifera. Molecules, 26: 3449.
Hu YM, Peng XJ, Wang FF, Chen PL, Zhao ML, Shen SH*. 2021. Natural population re-sequencing detects the genetic basis of local adaptation to low temperature in a woody plant. Plant Molecular Biology, 105: 585-599.
Zhang BH，Chen NZ，Peng XJ*, Shen SH*. 2021. Identification of the PP2C gene family in paper mulberry (Broussonetia papyrifera) and its roles in the regulation mechanism of the response to cold stress. Biotechnology letters, 43(5): 1089-1102.
2020
Zhao ML, Peng XJ, Chen NZ*, Shen SH*. 2020. Genome-wide identification of the TCP gene family in Broussonetia papyrifera and functional analysis of BpTCP8, 14 and 19 in shoot branching. Plants, 9: 1301.
Chen PL, Hu YM, Tang F, Zhao ML, Peng XJ*, Shen SH*. 2020. Cooperation between Broussonetia papyrifera and symbiotic fungal community to improve host local adaptability. Applied Microbiology and Biotechnology, 86: e00464-20.
Chen PL, Zhao ML, Tang F, Hu YM, Peng XJ*, Shen SH*. 2020. The effect of plant compartments on the Broussonetia papyrifera-associated fungal and bacterial communities. Applied Microbiology and Biotechnology, 104: 3627-3641.
沈世华*、彭献军、陈乃芝。2020。杂交构树产业扶贫实践与成效。中国科学院院刊，第 35 卷（增刊 2）：57-65。
2019
Chen PL, Zhao ML, Tang F, Hu YM, Peng XJ*, Shen SH*. 2019. The effect of environment on the microbiome associated with the roots of a native woody plant under different climate types in China. Applied Microbiology and Biotechnology, 103: 3899-3913.
Peng XJ, Liu H, Chen PL, Tang F, Hu YM, Wang FF, Pi Z, Zhao ML, Chen NZ, Chen H, Zhang XK, Yan XQ, Liu M, Fu XJ, Zhao GF, Yao P, Wang LL, Dai H, Li XM, Xiong W, Xu WC, Zheng HK, Yu HY*, Shen SH*. 2019. A chromosome-scale genome assembly of paper mulberry (Broussonetia papyrifera) and genetic basis of its forage and papermaking usage. Molecular Plant, 12: 661-677.
Liu H, Wang FF, Peng XJ, Huang JH, Shen SH*. 2019. Global phosphoproteomic analysis reveals the defense and response mechanisms of Jatropha curcas seedling under chilling stress. International Journal of Molecular Sciences, 20: 208.
2018
Wu QQ, Peng XJ, Yang MF, Zhang WP, Frank BD, Norman U, Jing YX*, Shen SH*. 2018. Rhizobia promote the growth of rice shoots by targeting cell signaling, division and expansion. Plant Molecular Biology, 97: 507-523.
沈世华*、彭献军、段瑞、熊伟。2018。科技引领创新 产业助力扶贫——杂交构树扶贫工程在山东菏泽的成效与启示。中国科学院院刊，33：979-986。
彭献军、沈世华*。2018。构树：一种新型木本模式植物。植物学报，53：372-381。
邳植、沈世华*。2018。构树作为新兴的蛋白饲料原料的研究。饲料工业，39：23-28。
胡艳敏、彭献军、沈世华*。2018。从古代科技史角度审视构树的多重文化内涵及应用价值。北京林业大学学报，17：38-43。
2017
Tang F, Chen NZ, Zhao ML, Wang YC, He RP, Peng XJ*, Shen SH*. 2017. Identification and functional divergence analysis of WOX gene family in paper mulberry. International Journal of Molecular Sciences, 18: 1782.
Pi Z, Zhao ML, Peng XJ, Shen SH*. 2017. Phosphoproteomic analysis of paper mulberry reveals phosphorylation functions in chilling tolerance. Journal of Proteome Research, 16:1944-1961.
Peng XJ, Wang Q, Liu H, Shen SH*. 2017. Phylogenetic and functional analysis of the basic transcription factor gene BTF3 from Jatropha curcas. Plant Growth Regulation, 82: 247-257.
2016
Wang YY, Ji KX, Shen SH, Chen H*. 2016. Probing molecular events associated with early development of thylakoid membranes by comparative proteomics and low temperature fluorescence. Journal of Proteomics, 143: 401-415.
Peng XJ, Liu H, Wan D, Shen SH*. 2016. Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2. BMC Genomics, 17: 251.
彭献军, 王金山, 沈世华*. 2016. 运用杂交构树进行尾矿生态修复和矿区绿化. 天津农业科学, 22(12): 111-119.
2015及以前
Peng XJ, Wu QQ, Teng LH, Tang F, Pi Z, Shen SH*. 2015. Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors. BMC Plant Biology, 15: 108.
Peng XJ, Teng LH, Yan XQ, Zhao ML, Shen SH*. 2015. The cold responsive mechanism of the paper mulberry: Decreased photosynthesis capacity and increased starch accumulation. BMC Genomics, 16: 898.
Liu H, Wang CP, Chen F, Shen SH*. 2015. Proteomic analysis of oil bodies in mature Jatropha curcas seeds with different lipid content. Journal of Proteomics, 113: 403-414.
Peng XJ, Wang YC, He RP, Zhao ML, Shen SH*. 2014. Global transcriptomics identification and analysis of transcriptional factors in different tissues of the paper mulberry. BMC Plant Biology, 14 (1): 194.
Peng XJ, Teng LH, Wang XM, Wang YC, Shen SH*.2014. De novo assembly of expressed transcripts and global transcriptomics analysis of seedling in paper mulberry (Broussonetia kazinoki x Broussonetia papyifera). PLoS ONE, 9(5): e97487.
Sun JW, Peng XJ, Fan WH, Tang MJ, Liu J, Shen SH*. 2014. Functional analysis of BpDREB2 gene involved in salt and drought response from a woody plant Broussonetia papyrifera. Gene, 535: 140-149.
Liu H, Wang CP, Liu GS*, Shen SH*. 2013. Proteomic analysis of the seed development in Jatropha curcas: from carbon flux to the lipid accumulation. Journal of Proteomics, 91: 23-40.
Wang XQ, Han F, Yang MF, Yang PF, Shen SH*. 2013. Exploring the response of rice (Oryza sativa) leaf to gibberellins: a proteomicstrategy. Rice, 6: 17.
Zhang MD*, Shen SH. 2013. Effective protein extraction protocol forproteomics studies of Jerusalem artichokeleaves. Journal of Separation Science, 36: 2203-2209.
Ji KX, Wang YY, Sun WN, Lou QJ, Mei HW, Shen SH, Chen H*. 2012. Drought-responsive mechanisms in rice genotypes with contrasting drought tolerance during reproductive stage. Journal of Plant Physiology, 169: 336-344
Chen Q, Zhang MD, Shen SH*. 2011. Effect of salt on malondialdehyde and antioxidant enzymes in seedling roots of Jerusalem artichoke (Helianthus tuberosus L.). Acta Physiologiae Plantarum, 33: 273-278.
Zhang MD, Chen Q, Shen SH*. 2011. Physiological responses of two Jerusalem artichoke cultivars to drought stress induced by polyethylene glycol. Acta Physiologiae Plantarum, 33: 313-318.
Fan WH, Cui WT, Li XF, Chen SY, Liu GS*, Shen SH*. 2011. Proteomics analysis of rice seedling responses to ovine saliva. Journal of Plant Physiology, 68: 500-509.
Peng XJ, Ma XY, Fan WH, Su M, Cheng LQ, Iftekhar A, Lee BH, Qi DM, Shen SH*, Liu GS*. 2011. Improved drought and salt tolerance of Arabidopsis thaliana by transgenic expression of a novel DREB gene from Leymus chinensis. Plant Cell Reports, 30: 1493-1502.
He DL, Han C, Yao JL, Shen SH and Yang PF*. 2011. Constructing the metabolic and regulatory pathways in germinating rice seeds through proteomic approach. Proteomics, 11: 2693–2713.
Chen Q, Zhang MD, Shen SH*. 2011. Comparison of protein extraction methods suitable for proteomics analysis in seedling roots of Jerusalem artichoke under salt (NaCl) stress. African Journal of Biotechnology, 10: 7650-7657.
Yang J, Yang MF, Zhang WP, Chen F, Shen SH*. 2011. A putative flowering-time-related Dof transcription factor gene, JcDof3, is controlled by the circadian clock in Jatropha curcas. Plant Science, 181: 667-674.
Liu H, Yang ZL, Yang MF, Shen SH*. 2011. The differential proteome of endosperm and embryo from mature seed of Jatropha curcas. Plant Science, 181: 660-666.
Tang MJ, Liu XF, Deng HP*, Shen SH*. 2011. Over-expression of JcDREB, a putative AP2/EREBP domain-containing transcription factor gene in woody biodiesel plant Jatropha curcas, enhances salt and freezing tolerance in transgenic Arabidopsis thalia. Plant Science, 181: 623-631.
Li XJ, Yang MF, Zhu Y, Liang Y, ShenSH*. 2011. Proteomic analysis of salt stress responses in rice shoot. Journal of Plant Biology, 54: 384-395
Liu Y, Chen H, Zhuang DF, Jiang D, Liu J, Wu GJ, Yang MF*, Shen SH*. 2010. Characterization of a DRE-binding transcription factor from asparagus (Asparagus officinalis L.), and its overexpression in Arabidopsis resulting in salt- and drought-resistant transgenic plants. International Journal of Plant Sciences, 171: 12-23.
Ji KX, Chi F, Yang MF, Shen SH*, Jing YX*, Cheng HP and Dazzo FB. 2010. Movement of Rhizobia inside tobacco and lifestyle alternation from endophytesto free-living Rhizobia on leaves. Journal of Microbiology and Biotechnology, 20: 238-244.
Li XJ, Yang MF, Chen H, Qu LQ, Chen F, Shen SH*. 2010. Abscisic acid pretreatment enhances salt tolerance of rice seedlings: Proteomic evidence. BBA-Proteins and Proteomics, 1804: 929-940.
Chi F, Yang PF, Han F, Jing YX*, Shen SH*. 2010. Proteomic analysis of rice seedlings infected by Sinorhizobium meliloti 1021. Proteomics, 10: 1861-1874.
Yang J, Yang MF, Wang D, Chen F* and Shen SH*. 2010. JcDof1, a Dof transcription factor gene, is associated with the light-mediated circadian clock in Jatropha curcas.Physiologia Plantarum, 139: 324-334.
Pan XL*, Jiang QY, Pan QY, Wen XF, Shi YD, Wang YJ, Pan TY, Xie SG, Zhang GY, Wu SJ, Chai YF, Zhang C, Wu ZX and Shen SH*. 2009. Proteomic analysis of ‘hybrid necrosis’ in wheat (Triticum aestivum) leaves. Functional Plant Biology, 36: 251–259.
Zhang CX, Zhao X, Han F, Yang MF*, Jing YX, Chida T, Shen SH*. 2009. Comparative proteome analysis of two antagonist Bacillus subtilis strains. Journal of Microbiology and Biotechnology, 19: 351-358.
Yang MF, Liu YJ, Liu Y, Chen H*, Chen F, Shen SH*. 2009. Proteomic analysis of oil mobilization in seed germination and postgermination development of Jatropha curcas. Journal of Proteome Research, 8: 1441-1451.
Wang XQ, Yang PF, Liu Z, Liu WH, Hu Y, Chen H, Kuang TY, Pei ZM, Shen SH, He YK*. 2009. Exploring the mechanism of Physcomitrella patens desiccation tolerance through a proteomic strategy. Plant Physiology, 149: 1739-1750.
Liu H, Liu YJ, Yang MF*, Shen SH*. 2009. A Comparative analysis of embryo and endosperm proteome from seeds of Jatropha curcas. Journal of Integrative Plant Biology, 51: 850-857.
Wang XQ, Yang PF, Liu Z, Xu Y, Kuang TY, Shen SH*, He YK*. 2009. Proteomic analysis of the cold stress response in the moss, Physcomitrella patens. Proteomics, 9: 4529-4538.
Han F, Chen H, Li XJ, Yang MF*, Liu Ge*, Shen SH*. 2009. A comparative proteomic analysis of rice seedlings under various high-temperature stresses. BBA-Proteins and Proteomics, 1794: 1625-1634.
Zhang CX, Zhao X, Jing YX, Chida T, Chen H, Shen SH*. 2008. Phenotypic and biological properties of two antagonist Bacillus subtilis strains. World Journal of Microbiology Biotechnology, 24: 2179-2181.
Wang XQ, Yang PF, Gao Q, Liu XL, Kuang TY, Shen SH*, He YK*. 2008. Proteomic analysis of the response to high-salinity stress in Physcomitrella patens, 228: 167-177.
Jiang QY, Chen H, Pan XL*, Pan QY, Shi YH, Li XR, Zhang GY, Wang YJ, Xie SG, Shen SH*. 2008. Proteomic analysis of wheat (T. aestivum L) hybrid necrosis. Plant Science, 175: 394-403
Lu P, Chen LJ, Li GX, Shen SH, Wang LL, Jiang QY*, Zhang JF. 2007. Influence of furfural concentration on growth and ethanol yield of Saccharomyces kluyveri. Journal of Environmental Sciences.19: 1528-1532.
Yang PF, Chen H, Liang Y, Shen SH*. 2007. Proteomic analysis of de-etiolated rice seedlings upon exposure to light. Proteomics, 7: 2459-2468.
Yang PF, Li XJ, Wang XQ, Chen H, Chen F, Shen SH*. 2007. Proteomic analysis of rice (Oryza sativa) seeds during germination. Proteomics, 7: 3358-3368.
Liang Y, Chen H, Tang MJ and Shen SH*. 2007. Proteome analysis of an ectomycorrhizal fungus Boletus edulis under salt shock. Mycological Research, 111: 939-946.
Liang Y, Chen H, Tang MJ, Yang PF, Shen SH*. 2007. Responses of Jatropha curcas seedlings to cold stress: photosynthesis related proteins and chlorophyll fluorescence characteristics. Physiologia Plantarum, 131: 508-517.
Tang MJ, Sun JW, Liu Y, Chen F, Shen SH*. 2007. Isolation and functional characterization of the JcERF gene, a putative AP2/EREBP domain-containing transcription factor, in woody oil plant Jatropha curcas. Plant Molecular Biology, 63: 419-428.
Han WW, Shen SH*, Tai PD. 2007. Proteome analysis of inhibitory effect of gadolinium on Sinorhizobium fredii. Journal of Rare Earths, 25: 106-110.
Yang PF, Shen SH*, Kuang TY. 2006. A comparative analysis of the endosperm proteins separated bytwo-dimensional electrophoresis for two cultivars of hybrid rice (Oryza sativa L.). Journal of Integrative Plant Biology, 48: 1028-1033.
Zuo P, Chen H*, Wu YS, Shen SH, Wang P, Ai XC, Zhang JP*, Li LB, Kuang TY. 2006. Effects of different aggregation forms of LHC II from Bryopsis corticulans on the excited state properties of Chl a.Chinese Science Bulletin, 51: 1444-1451.
Zhou XJ, Liang Y, Chen H, Shen SH*, Jing YX*. 2006. Effects of rhizobia inoculation and nitrogen fertilization on soybean photosynthetic physiology. Photosynthetica, 44: 530-535.
Chen YM, Chen T, Shen SH, Zheng MZ, Guo YM, Lin JX*, Baluska F, Samaj J. 2006. Differential display proteomic analysis of Picea meyeri pollen germination and pollen tube growth after actin depolymerization by latrunculin B. The Plant Journal, 47: 174-195.
Yang PF, Liang Y, Shen SH*, Kuang TY. 2006. Proteome analysis of rice uppermost internodes at the milky stage. Proteomics, 6: 3330-3338.
Yang PF, Li XJ, Liang Y, Jing YX, Shen SH*, Kuang TY. 2006. Proteomic analysis of the response of Liangyoupeijiu (A super high-yield hybrid rice) seedlings to cold stress.Journal of Integrative Plant Biology, 48: 945-951.
Lü SY, Jing YX, Shen SH, Zhao HY, Ma LQ, Zhou XJ, Ren Q，Li YF*. 2005. Antiporter Gene from Hordum brevisubulatum (Trin.) Link and Its Overexpression in Transgenic Tobaccos. Journal of Integrative Plant Biology, 47: 343-349.
Chi F, Shen SH, Cheng HP, Jing YX*, Yanni YG. and Dazzo FB. 2005. Ascending migration of endophytic Rhizobia from roots to leaves inside rice plants and assessment of their benefits to the growth physiology of rice. Applied and Environmental Microbiology, 71: 7271-7278.
Chen H*, Shen SH, Liang Y, Leng J, Tang MJ, Gong YD. 2005. Evidence for dissociation of chlorophyll b from the main light-harvesting complex in the oligomerization state isolated from marine alga, Bryopsis corticulans. Biochimica et Biophysica Acta-Bioenergetics, 1707: 170-179.
Tang MJ，Lü SY, Jing YX, Zhou XJ, Sun JW, Shen SH*. 2005. Isolation and identification of a cold-inducible gene encoding a putative DRE-binding transcription factor from Festuca arundinacea. Plant Physiology and Biochemistry, 43: 233-239.
Qi SW, Yang PF, Jing YX, Shen SH* & Yang SS*. 2004. A proteomic analysis of bacterial strain Sinorhizobium fredii RT19 subjected to salt shock. Chinese Science Bulletin, 49: 1828-1833.
Chen H*, Shen SH, He JF, Leng J, Li LB & Kuang TY. 2004. A light-harvesting siphonaxanthin- chlorophyll a/b-protein complex of marine green alga, Bryopsis corticulans. Chinese Science Bulletin, 49: 1936-1941.
Yang GX, Jan A, Shen SH, Yazaki J, Ishikawa M, Shimatani Z, Kishimoto N, Kikuchi S, Matsumoto H and Komatsu S*.2004.Microarray analysis of brassinosteroids- and gibberellin-regulated gene expression in rice seedlings. Molecular Genetics and Genomics, 271:468-478.
Shen SH and Jing YX*. 2003. Present status and development on biological nitrogen fixation research in China. Chinese Science Bulletin, 48: 954-960.
Yang GX, Shen SH, Yang SH, Komatsu S*. 2003. OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin. Plant Physiology and Biochemistry, 41: 369-374.
Shen SH*, Jing YX, Kuang TY. 2003. Proteomics approach to identify wound-response related proteins from rice leaf sheath. Proteomics, 3: 527-535.
Shen SH, Sharma A, Komatsu S*. 2003. Characterization of Proteins Responsive to Gibberellin in the Leaf-Sheath of Rice (Oryza sativa L.) Seedling Using Proteome Analysis. Biological Pharmaceutical Bulletin, 26: 129-136.
Komatsu S*, Konishi H, Shen SH, Yang GX. 2003. Rice proteomics: a step toward functional analysis of the rice genome. Molecular Cellular & Proteomics, 2: 2-10.
Shen SH, Matsubae M, Takao T, Komatsu S*. 2002. A proteomics analysis of leaf sheath from rice. Journal of Biochemistry, 132: 613-620.
著作专著：
[1] 沈世华，2011。微生物蛋白质组学研究进展。李俊、沈德龙、林先贵主编，农业微生物研究与产业化进展。北京：科学出版社。
[2] 沈世华等译，2013。H. Thiellement, M. Zivy, C. Damerval, V. Méchin主编，植物蛋白质组学-实验指南。北京：科学出版社。
[3] 沈世华、邓华平编著，2016。构树栽培及饲用技术。北京：中国农业科技技术出版社。
[4] 沈世华、罗朝立主编，2023。构树扶贫工程——我国生态农牧业发展的新探索。北京：中国文联出版社。
[5] 沈世华主编，2023。中国杂交构树产业发展蓝皮书（2022）。北京：研究出版社。
[6] 沈世华主编，2024。中国杂交构树产业发展蓝皮书（2023）。北京：研究出版社。
授权发明专利：
[1] 沈世华、孙静文、刘 杰等。一种植物DREB转录因子及其编码基因与应用。中国： ZL200510082838.0。2007-01-24。
[2] 沈世华、唐明娟、刘 杰。一个麻疯树冷诱导转录因子及其编码基因与应用。中国：ZL200610000259.1。2007-12-26。
[3] 沈世华、刘玉君、苟 平。一种麻疯树种子胚乳蛋白质提取方法。中国：ZL200710087030。2009-09-16。
[4] 沈世华、刘玉君、苟 平。麻疯树种子胚乳蛋白质高分辨率的分离方法。中国：ZL200710087031。2009-09-16
[5] 唐明娟、沈世华、刘杰。一个麻疯树盐诱导转录因子及其编码基因与应用。中国：ZL200610000100.X。2010-02-03。
[6] 李国学、路鹏、沈世华等。一种利用秸秆水解物发酵生产乙醇的微生物菌剂及其应用。中国：ZL200810224265。2010-06-30。
[7] 沈世华、刘玉君、苟 平。一种麻疯树种子油体蛋白质提取方法。中国：ZL200710195002。2010-12-15。
[8] 沈世华、刘玉君、苟 平。一种麻疯树种子油体蛋白质分离方法。中国：ZL200710195003。2010-12-15。
[9] 刘公社、沈世华、彭献军等。一种羊草干旱诱导转录因子及其编码基因与应用。中国：ZL200810211751.2。2012.08.22。
[10] 沈世华、彭献军、王金山。一种利用原土种植进行滨海盐碱地生态绿化的方法。中国：ZL201310750185.3。2017-01-25（已转让）。
[11] 沈世华、彭献军、王俞程等。一种杂交构树干旱胁迫相关的转录因子及其编码基因与应用。中国：ZL201510756995.9。2018-11-13（已转让）。
[12] 沈世华、彭献军、王俞程等。一种杂交构树盐胁迫相关的转录因子及其编码基因与应用。中国：ZL201510756134.0。2018-12-21（已转让）。
[13] 沈世华、王小曼、邳植等。一种构树叶片蛋白质分离方法。中国：ZL201610169439.6。2019-03-08（已转让）。
[14] 沈世华、彭献军、王琪。蛋白质在调控植物抗逆性中的应用。中国：ZL201510757191.0。2020-02-14（已转让）。
[15] 沈世华、彭献军、王丹。抗逆相关蛋白在调控植物抗逆性中的应用。中国：ZL201510757177.0。2020-02-14（已转让）。
[16] 沈世华、彭献军、赵美玲等。一种杂交构树转录因子BpSEM及其编码基因与应用。中国：ZL201510757495.7。2020-07-24（已转让）。
[17] 沈世华、荆玉祥、彭献军等。监测根瘤菌在非豆科植物中定殖过程的方法。中国：ZL201611127119.0。2020-07-24。
[18] 沈世华、彭献军。一种用于鉴定杂交构树的分子标记及其应用。中国：ZL201910599077.8。2021-06-01（已转让）。
